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RUNX1 RUNX family transcription factor 1 [ Equus asinus (ass) ]

Gene ID: 106832821, updated on 13-Mar-2024

Summary

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Gene symbol
RUNX1
Gene description
RUNX family transcription factor 1
See related
Ensembl:ENSEASG00005006136
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 18 NC_052194.1 (16410985..16656480)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637920.1 (414827..656592)

Chromosome 18 - NC_052194.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123278313 Neighboring gene uncharacterized LOC106832849 Neighboring gene uncharacterized LOC123278257 Neighboring gene uncharacterized LOC123278255 Neighboring gene uncharacterized LOC123278256 Neighboring gene uncharacterized LOC123278254

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemopoiesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
runt-related transcription factor 1
Names
runt related transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052194.1 Reference ASM1607732v2

    Range
    16410985..16656480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014843713.2 → XP_014699199.1  runt-related transcription factor 1 isoform X10

    UniProtKB/TrEMBL
    A0A9L0ITA0
    Conserved Domains (2) summary
    pfam00853
    Location:72 → 192
    Runt; Runt domain
    pfam08504
    Location:312 → 403
    RunxI; Runx inhibition domain

  2. XM_014843709.2 → XP_014699195.1  runt-related transcription factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C4LB05, A0A9L0K0V9
    Conserved Domains (3) summary
    pfam00853
    Location:72 → 193
    Runt; Runt domain
    pfam08504
    Location:376 → 467
    RunxI; Runx inhibition domain
    cl26464
    Location:169 → 413
    Atrophin-1; Atrophin-1 family

  3. XM_014843710.2 → XP_014699196.1  runt-related transcription factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C4LB05, A0A9L0K0V9
    Related
    ENSEASP00005008525.1, ENSEAST00005009295.2
    Conserved Domains (3) summary
    pfam00853
    Location:72 → 193
    Runt; Runt domain
    pfam08504
    Location:376 → 467
    RunxI; Runx inhibition domain
    cl26464
    Location:169 → 413
    Atrophin-1; Atrophin-1 family

  4. XM_044750929.1 → XP_044606864.1  runt-related transcription factor 1 isoform X7

  5. XM_044750928.1 → XP_044606863.1  runt-related transcription factor 1 isoform X6

    Conserved Domains (1) summary
    pfam08580
    Location:365 → 552
    KAR9; Yeast cortical protein KAR9

  6. XM_044750927.1 → XP_044606862.1  runt-related transcription factor 1 isoform X5

  7. XM_044750924.1 → XP_044606859.1  runt-related transcription factor 1 isoform X1

    Conserved Domains (1) summary
    pfam08580
    Location:330 → 517
    KAR9; Yeast cortical protein KAR9

  8. XM_044750925.1 → XP_044606860.1  runt-related transcription factor 1 isoform X2

  9. XM_044750926.1 → XP_044606861.1  runt-related transcription factor 1 isoform X3

    Conserved Domains (2) summary
    pfam16214
    Location:3 → 137
    AC_N; Adenylyl cyclase N-terminal extracellular and transmembrane region
    pfam08580
    Location:296 → 483
    KAR9; Yeast cortical protein KAR9

  10. XM_044750930.1 → XP_044606865.1  runt-related transcription factor 1 isoform X8

    UniProtKB/TrEMBL
    A0A9L0I460, A0A9L0K0V9
    Related
    ENSEASP00005034641.1, ENSEAST00005078996.1
    Conserved Domains (1) summary
    PHA03247
    Location:155 → 399
    PHA03247; large tegument protein UL36; Provisional

  11. XM_014843712.2 → XP_014699198.1  runt-related transcription factor 1 isoform X9

    UniProtKB/TrEMBL
    A0A8C4PIP6, A0A9L0K0V9
    Related
    ENSEASP00005008529.2, ENSEAST00005009300.2
    Conserved Domains (2) summary
    pfam00853
    Location:34 → 155
    Runt; Runt domain
    pfam08504
    Location:338 → 429
    RunxI; Runx inhibition domain
Nucleotide Protein
Heading Accession and Version

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