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SPEN spen family transcriptional repressor [ Equus asinus (ass) ]

Gene ID: 106827998, updated on 13-Mar-2024

Summary

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Gene symbol
SPEN
Gene description
spen family transcriptional repressor
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
18
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 5 NC_052181.1 (13113381..13195166)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637036.1 (2340990..2399168, complement)

Chromosome 5 - NC_052181.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 82 Neighboring gene filamin binding LIM protein 1 Neighboring gene zinc finger and BTB domain containing 17 Neighboring gene steroid receptor associated and regulated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
msx2-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052181.1 Reference ASM1607732v2

    Range
    13113381..13195166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044769761.1 → XP_044625696.1  msx2-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A8C4PQK5
    Conserved Domains (5) summary
    TIGR01628
    Location:269 → 524
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PTZ00121
    Location:710 → 1156
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:2955 → 3430
    PHA03247; large tegument protein UL36; Provisional
    PRK10811
    Location:1525 → 1723
    rne; ribonuclease E; Reviewed
    cl17169
    Location:368 → 444
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_044769758.1 → XP_044625693.1  msx2-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8C4PQK5
    Conserved Domains (6) summary
    TIGR01628
    Location:337 → 592
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PTZ00121
    Location:778 → 1224
    PTZ00121; MAEBL; Provisional
    smart00360
    Location:8 → 75
    RRM; RNA recognition motif
    PHA03247
    Location:2950 → 3480
    PHA03247; large tegument protein UL36; Provisional
    PRK10811
    Location:1593 → 1791
    rne; ribonuclease E; Reviewed
    cl17169
    Location:436 → 512
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_044769762.1 → XP_044625697.1  msx2-interacting protein isoform X3

    UniProtKB/TrEMBL
    A0A8C4PQK5
    Conserved Domains (6) summary
    TIGR01628
    Location:178 → 433
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PTZ00121
    Location:619 → 1065
    PTZ00121; MAEBL; Provisional
    smart00360
    Location:8 → 75
    RRM; RNA recognition motif
    PHA03247
    Location:2791 → 3321
    PHA03247; large tegument protein UL36; Provisional
    PRK10811
    Location:1434 → 1632
    rne; ribonuclease E; Reviewed
    cl17169
    Location:277 → 353
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_044769759.1 → XP_044625694.1  msx2-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A8C4PQK5
    Conserved Domains (5) summary
    TIGR01628
    Location:269 → 524
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PTZ00121
    Location:710 → 1156
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:2955 → 3430
    PHA03247; large tegument protein UL36; Provisional
    PRK10811
    Location:1525 → 1723
    rne; ribonuclease E; Reviewed
    cl17169
    Location:368 → 444
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_044769760.1 → XP_044625695.1  msx2-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A8C4PQK5
    Conserved Domains (5) summary
    TIGR01628
    Location:269 → 524
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PTZ00121
    Location:710 → 1156
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:2955 → 3430
    PHA03247; large tegument protein UL36; Provisional
    PRK10811
    Location:1525 → 1723
    rne; ribonuclease E; Reviewed
    cl17169
    Location:368 → 444
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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