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TRERF1 transcriptional regulating factor 1 [ Thamnophis sirtalis ]

Gene ID: 106540956, updated on 13-Mar-2024

Summary

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Gene symbol
TRERF1
Gene description
transcriptional regulating factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Thamnophis sirtalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Thamnophis_sirtalis-6.0 (GCF_001077635.1) Unplaced Scaffold NW_013657698.1 (1203870..1295169, complement)

NW_013657698.1Genomic Context describing neighboring genes Neighboring gene UTP25 small subunit processome component Neighboring gene mitochondrial ribosomal protein S10 Neighboring gene ubiquitin protein ligase E3 component n-recognin 2 Neighboring gene peripherin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013657698.1 Unplaced Scaffold Reference Thamnophis_sirtalis-6.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional-regulating factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thamnophis sirtalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Thamnophis_sirtalis-6.0

Genomic

  1. NW_013657698.1 Reference Thamnophis_sirtalis-6.0

    Range
    1203870..1295169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014056304.1 → XP_013911779.1  transcriptional-regulating factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I9X8E1
    Conserved Domains (5) summary
    smart00717
    Location:880 → 923
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:1006 → 1025
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:771 → 825
    ELM2; ELM2 domain
    pfam12756
    Location:470 → 514
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    cl21498
    Location:879 → 923
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  2. XM_014056324.1 → XP_013911799.1  transcriptional-regulating factor 1 isoform X5

    UniProtKB/TrEMBL
    A0A6I9X8F8
    Conserved Domains (5) summary
    smart00717
    Location:782 → 825
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:908 → 927
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:673 → 727
    ELM2; ELM2 domain
    pfam12756
    Location:471 → 515
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    cl21498
    Location:781 → 825
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  3. XM_014056318.1 → XP_013911793.1  transcriptional-regulating factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A6I9XLT2
    Conserved Domains (5) summary
    smart00717
    Location:866 → 909
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:992 → 1011
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:757 → 811
    ELM2; ELM2 domain
    pfam12756
    Location:471 → 515
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    cl21498
    Location:865 → 909
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  4. XM_014056311.1 → XP_013911786.1  transcriptional-regulating factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A6I9XBY7
    Conserved Domains (5) summary
    smart00717
    Location:877 → 920
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:1003 → 1022
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:768 → 822
    ELM2; ELM2 domain
    pfam12756
    Location:471 → 515
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    cl21498
    Location:876 → 920
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  5. XM_014056277.1 → XP_013911752.1  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9XBW6
    Conserved Domains (5) summary
    smart00717
    Location:881 → 924
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:1007 → 1026
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:772 → 826
    ELM2; ELM2 domain
    pfam12756
    Location:471 → 515
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    cl21498
    Location:880 → 924
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  6. XM_014056285.1 → XP_013911760.1  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9XBW6
    Conserved Domains (5) summary
    smart00717
    Location:881 → 924
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:1007 → 1026
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:772 → 826
    ELM2; ELM2 domain
    pfam12756
    Location:471 → 515
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    cl21498
    Location:880 → 924
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  7. XM_014056291.1 → XP_013911766.1  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9XBW6
    Conserved Domains (5) summary
    smart00717
    Location:881 → 924
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:1007 → 1026
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:772 → 826
    ELM2; ELM2 domain
    pfam12756
    Location:471 → 515
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    cl21498
    Location:880 → 924
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  8. XM_014056298.1 → XP_013911773.1  transcriptional-regulating factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9XBW6
    Conserved Domains (5) summary
    smart00717
    Location:881 → 924
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    sd00017
    Location:1007 → 1026
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01448
    Location:772 → 826
    ELM2; ELM2 domain
    pfam12756
    Location:471 → 515
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    cl21498
    Location:880 → 924
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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