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pprc1 PPARG related coactivator 1 [ Austrofundulus limnaeus ]

Gene ID: 106518771, updated on 19-Oct-2023

Summary

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Gene symbol
pprc1
Gene description
PPARG related coactivator 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952468.1 (129914..137651, complement)

NW_013952468.1Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 5 Neighboring gene uncharacterized LOC106518770 Neighboring gene LIM domain-binding protein 1 Neighboring gene armadillo like helical domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952468.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome proliferator-activated receptor gamma coactivator-related protein 1
Names
peroxisome proliferator-activated receptor gamma, coactivator-related 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952468.1 Reference Austrofundulus_limnaeus-1.0

    Range
    129914..137651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014010171.1 → XP_013865625.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I4BD09
    Conserved Domains (2) summary
    COG0724
    Location:993 → 1080
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:1021 → 1111
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_014010172.1 → XP_013865626.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I4BD06
    Conserved Domains (2) summary
    COG0724
    Location:991 → 1079
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:1020 → 1110
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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