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clip4 CAP-Gly domain containing linker protein family member 4 [ Austrofundulus limnaeus ]

Gene ID: 106518499, updated on 19-Oct-2023

Summary

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Gene symbol
clip4
Gene description
CAP-Gly domain containing linker protein family member 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952404.1 (553931..585251)

NW_013952404.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 66 member 3 Neighboring gene ciliary microtubule inner protein 5 Neighboring gene ALK receptor tyrosine kinase Neighboring gene uncharacterized LOC106518538 Neighboring gene uncharacterized LOC106518228

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952404.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule plus-end binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule plus-end IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CAP-Gly domain-containing linker protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952404.1 Reference Austrofundulus_limnaeus-1.0

    Range
    553931..585251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014009829.1 → XP_013865283.1  CAP-Gly domain-containing linker protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A2I4BC44
    Conserved Domains (4) summary
    cd00204
    Location:119 → 244
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01302
    Location:524 → 587
    CAP_GLY; CAP-Gly domain
    pfam12796
    Location:129 → 235
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:171 → 202
    ANK; ANK repeat [structural motif]

  2. XM_014009837.1 → XP_013865291.1  CAP-Gly domain-containing linker protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A2I4BC06
    Conserved Domains (4) summary
    cd00204
    Location:99 → 224
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01302
    Location:504 → 567
    CAP_GLY; CAP-Gly domain
    pfam12796
    Location:109 → 215
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:151 → 182
    ANK; ANK repeat [structural motif]

  3. XM_014009855.1 → XP_013865309.1  CAP-Gly domain-containing linker protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A2I4BC73
    Conserved Domains (4) summary
    cd00204
    Location:40 → 165
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01302
    Location:445 → 508
    CAP_GLY; CAP-Gly domain
    pfam12796
    Location:50 → 156
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:92 → 123
    ANK; ANK repeat [structural motif]

  4. XM_014009820.1 → XP_013865274.1  CAP-Gly domain-containing linker protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A2I4BC44
    Conserved Domains (4) summary
    cd00204
    Location:119 → 244
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01302
    Location:524 → 587
    CAP_GLY; CAP-Gly domain
    pfam12796
    Location:129 → 235
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:171 → 202
    ANK; ANK repeat [structural motif]

  5. XM_014009846.1 → XP_013865300.1  CAP-Gly domain-containing linker protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A2I4BC33
    Conserved Domains (4) summary
    cd00204
    Location:119 → 244
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01302
    Location:493 → 556
    CAP_GLY; CAP-Gly domain
    pfam12796
    Location:129 → 235
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:171 → 202
    ANK; ANK repeat [structural motif]

  6. XM_014009864.1 → XP_013865318.1  CAP-Gly domain-containing linker protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A2I4BC73
    Conserved Domains (4) summary
    cd00204
    Location:40 → 165
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01302
    Location:445 → 508
    CAP_GLY; CAP-Gly domain
    pfam12796
    Location:50 → 156
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:92 → 123
    ANK; ANK repeat [structural motif]
Nucleotide Protein
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