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HIC2 HIC ZBTB transcriptional repressor 2 [ Anser cygnoides (Swan goose) ]

Gene ID: 106031265, updated on 7-Aug-2024

Summary

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Gene symbol
HIC2
Gene description
HIC ZBTB transcriptional repressor 2
See related
EnsemblRapid:ENSACDG00000000159
Gene type
protein coding
RefSeq status
MODEL
Organism
Anser cygnoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_07 current Taihu_goose_T2T_genome (GCF_040182565.1) 17 NC_089889.1 (9509033..9568302)
100 previous assembly GooseV1.0 (GCF_002166845.1) Unplaced Scaffold NW_025927689.1 (4332170..4365145, complement)

Chromosome 17 - NC_089889.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125182798 Neighboring gene YdjC chitooligosaccharide deacetylase homolog Neighboring gene ubiquitin conjugating enzyme E2 L3 Neighboring gene phosphatidylinositol 4-kinase alpha Neighboring gene serpin family D member 1 Neighboring gene synaptosome associated protein 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypermethylated in cancer 2 protein
Names
hypermethylated in cancer 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040182565.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Taihu_goose_T2T_genome Primary Assembly

Genomic

  1. NC_089889.1 Reference Taihu_goose_T2T_genome Primary Assembly

    Range
    9509033..9568302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013173552.3 → XP_013029006.1  hypermethylated in cancer 2 protein

    See identical proteins and their annotated locations for XP_013029006.1

    UniProtKB/TrEMBL
    A0A8B9IDT0
    Conserved Domains (7) summary
    smart00225
    Location:25 → 121
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:514 → 568
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:262 → 480
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:490 → 510
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:488 → 510
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:18 → 118
    BTB; BTB/POZ domain
    pfam13465
    Location:531 → 555
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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