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Hdac9 histone deacetylase 9 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105991399, updated on 13-Mar-2024

Summary

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Gene symbol
Hdac9
Gene description
histone deacetylase 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267288.1 (3130960..3810470, complement)

NW_012267288.1Genomic Context describing neighboring genes Neighboring gene ferritin light chain pseudogene Neighboring gene twist family bHLH transcription factor 1 Neighboring gene sperm motility kinase Y-like Neighboring gene phosphoribosyl pyrophosphate synthetase 1 like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267288.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267288.1 Reference Dord_2.0

    Range
    3130960..3810470 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013024045.1 → XP_012879499.1  histone deacetylase 9 isoform X6

    UniProtKB/TrEMBL
    A0A1S3FTZ9
    Conserved Domains (2) summary
    cd10163
    Location:57 → 146
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:652 → 1029
    HDAC_classIIa; Histone deacetylases, class IIa

  2. XM_013024043.1 → XP_012879497.1  histone deacetylase 9 isoform X4

    UniProtKB/TrEMBL
    A0A1S3FUH1
    Conserved Domains (1) summary
    cl23765
    Location:57 → 143
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  3. XM_013024042.1 → XP_012879496.1  histone deacetylase 9 isoform X3

    UniProtKB/TrEMBL
    A0A1S3FSF8
    Conserved Domains (1) summary
    cl23765
    Location:57 → 143
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  4. XM_013024037.1 → XP_012879491.1  histone deacetylase 9 isoform X1

    UniProtKB/TrEMBL
    A0A1S3FSF3
    Conserved Domains (1) summary
    cd10163
    Location:57 → 146
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

  5. XM_013024040.1 → XP_012879494.1  histone deacetylase 9 isoform X2

    See identical proteins and their annotated locations for XP_012879494.1

    UniProtKB/TrEMBL
    A0A1S3FUG6
    Conserved Domains (1) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

  6. XM_013024039.1 → XP_012879493.1  histone deacetylase 9 isoform X2

    See identical proteins and their annotated locations for XP_012879493.1

    UniProtKB/TrEMBL
    A0A1S3FUG6
    Conserved Domains (1) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

  7. XM_013024044.1 → XP_012879498.1  histone deacetylase 9 isoform X5

    UniProtKB/TrEMBL
    A0A1S3FSF6
    Conserved Domains (1) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

  8. XM_013024038.1 → XP_012879492.1  histone deacetylase 9 isoform X2

    See identical proteins and their annotated locations for XP_012879492.1

    UniProtKB/TrEMBL
    A0A1S3FUG6
    Conserved Domains (1) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
Nucleotide Protein
Heading Accession and Version

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