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Cnot4 CCR4-NOT transcription complex subunit 4 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105989566, updated on 13-Mar-2024

Summary

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Gene symbol
Cnot4
Gene description
CCR4-NOT transcription complex subunit 4
See related
Ensembl:ENSDORG00000012268
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267272.1 (3492886..3596346, complement)

NW_012267272.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 23 member 1-like Neighboring gene stimulated by retinoic acid 8 Neighboring gene nucleoporin 205 Neighboring gene uncharacterized LOC105989537

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267272.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267272.1 Reference Dord_2.0

    Range
    3492886..3596346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013021673.1 → XP_012877127.1  CCR4-NOT transcription complex subunit 4 isoform X5

    UniProtKB/TrEMBL
    A0A1S3FMM9
    Conserved Domains (3) summary
    COG5175
    Location:14 → 319
    MOT2; Transcriptional repressor [Transcription]
    cd12438
    Location:104 → 201
    RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
    pfam14570
    Location:14 → 60
    zf-RING_4; RING/Ubox like zinc-binding domain

  2. XM_013021670.1 → XP_012877124.1  CCR4-NOT transcription complex subunit 4 isoform X2

    UniProtKB/TrEMBL
    A0A1S3FM74
    Related
    ENSDORP00000011535.2, ENSDORT00000012269.2
    Conserved Domains (3) summary
    COG5175
    Location:14 → 319
    MOT2; Transcriptional repressor [Transcription]
    cd12438
    Location:104 → 201
    RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
    pfam14570
    Location:14 → 60
    zf-RING_4; RING/Ubox like zinc-binding domain

  3. XM_013021672.1 → XP_012877126.1  CCR4-NOT transcription complex subunit 4 isoform X4

    UniProtKB/TrEMBL
    A0A1S3FKP9
    Related
    ENSDORP00000026461.1, ENSDORT00000033146.1
    Conserved Domains (3) summary
    COG5175
    Location:14 → 322
    MOT2; Transcriptional repressor [Transcription]
    cd12438
    Location:104 → 201
    RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
    pfam14570
    Location:14 → 60
    zf-RING_4; RING/Ubox like zinc-binding domain

  4. XM_013021669.1 → XP_012877123.1  CCR4-NOT transcription complex subunit 4 isoform X1

    UniProtKB/TrEMBL
    A0A1S3FKL9
    Conserved Domains (3) summary
    COG5175
    Location:14 → 322
    MOT2; Transcriptional repressor [Transcription]
    cd12438
    Location:104 → 201
    RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
    pfam14570
    Location:14 → 60
    zf-RING_4; RING/Ubox like zinc-binding domain

  5. XM_013021671.1 → XP_012877125.1  CCR4-NOT transcription complex subunit 4 isoform X3

    UniProtKB/TrEMBL
    A0A1S3FLC1
    Conserved Domains (3) summary
    COG5175
    Location:14 → 293
    MOT2; Transcriptional repressor [Transcription]
    cd12438
    Location:104 → 172
    RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
    pfam14570
    Location:14 → 60
    zf-RING_4; RING/Ubox like zinc-binding domain

  6. XM_013021674.1 → XP_012877128.1  CCR4-NOT transcription complex subunit 4 isoform X6

    UniProtKB/TrEMBL
    A0A1S3FKM4
    Related
    ENSDORP00000020885.1, ENSDORT00000023291.1
    Conserved Domains (1) summary
    COG5175
    Location:14 → 322
    MOT2; Transcriptional repressor [Transcription]

  7. XM_013021675.1 → XP_012877129.1  CCR4-NOT transcription complex subunit 4 isoform X7

    UniProtKB/TrEMBL
    A0A1S3FM79
    Conserved Domains (1) summary
    COG5175
    Location:14 → 319
    MOT2; Transcriptional repressor [Transcription]
Nucleotide Protein
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