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mtrex Mtr4 exosome RNA helicase [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105938129, updated on 13-Mar-2024

Summary

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Gene symbol
mtrex
Gene description
Mtr4 exosome RNA helicase
See related
Ensembl:ENSFHEG00000023014
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
skiv2l2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
27
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 8 NC_046368.1 (20589475..20610714, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234505.1 (692149..713001, complement)

Chromosome 8 - NC_046368.1Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 1a Neighboring gene phospholipid phosphatase 1a Neighboring gene DEAH (Asp-Glu-Ala-His) box polypeptide 29 Neighboring gene proline-serine-threonine phosphatase interacting protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: exosome RNA helicase MTR4
Names
Ski2 like RNA helicase 2
Superkiller viralicidic activity 2 2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046368.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    20589475..20610714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012879762.3 → XP_012735216.3  LOW QUALITY PROTEIN: exosome RNA helicase MTR4

    UniProtKB/TrEMBL
    A0A3Q2Q307
    Conserved Domains (1) summary
    COG4581
    Location:20 → 1036
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

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