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sf3b5 splicing factor 3b, subunit 5 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105927966, updated on 24-Aug-2024

Summary

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Gene symbol
sf3b5
Gene description
splicing factor 3b, subunit 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 22
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 22 NC_046382.1 (29872566..29876161, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234287.1 (740354..743792)

Chromosome 22 - NC_046382.1Genomic Context describing neighboring genes Neighboring gene regulator of G protein signaling 17 Neighboring gene uncharacterized LOC118557161 Neighboring gene opioid receptor, mu 1 Neighboring gene phosphatase and actin regulator 2 Neighboring gene pleckstrin homology domain-containing family A member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046382.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    29872566..29876161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012864997.3 → XP_012720451.1  splicing factor 3B subunit 5

    See identical proteins and their annotated locations for XP_012720451.1

    UniProtKB/TrEMBL
    A0A3Q2PWV9
    Conserved Domains (1) summary
    pfam07189
    Location:3 → 77
    SF3b10; Splicing factor 3B subunit 10 (SF3b10)

  2. XM_021317734.2 → XP_021173409.1  splicing factor 3B subunit 5

    UniProtKB/TrEMBL
    A0A3Q2PWV9
    Conserved Domains (1) summary
    pfam07189
    Location:3 → 77
    SF3b10; Splicing factor 3B subunit 10 (SF3b10)
Nucleotide Protein
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