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cactin cactin [ Clupea harengus (Atlantic herring) ]

Gene ID: 105904018, updated on 18-Jun-2024

Summary

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Gene symbol
cactin
Gene description
cactin
See related
Ensembl:ENSCHAG00020009502
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 22
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 22 NC_045173.1 (1517568..1523573)

Chromosome 22 - NC_045173.1Genomic Context describing neighboring genes Neighboring gene collagenase 3-like Neighboring gene zinc finger and BTB domain-containing protein 24-like Neighboring gene semaphorin 4e Neighboring gene signal transducing adaptor family member 2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045173.1 Chromosome 22 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cactin
Names
cactin, spliceosome C complex subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045173.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    1517568..1523573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031560237.2 → XP_031416097.1  cactin

    UniProtKB/TrEMBL
    A0A6P8EYZ5
    Related
    ENSCHAP00020020680.1, ENSCHAT00020022026.1
    Conserved Domains (2) summary
    pfam09732
    Location:729 → 853
    CactinC_cactus; Cactus-binding C-terminus of cactin protein
    pfam10312
    Location:343 → 528
    Cactin_mid; Conserved mid region of cactin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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