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paplna papilin a, proteoglycan-like sulfated glycoprotein [ Clupea harengus (Atlantic herring) ]

Gene ID: 105899101, updated on 18-Jun-2024

Summary

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Gene symbol
paplna
Gene description
papilin a, proteoglycan-like sulfated glycoprotein
See related
Ensembl:ENSCHAG00020015556
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
papln
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
27
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 14 NC_045165.1 (8028329..8051890)

Chromosome 14 - NC_045165.1Genomic Context describing neighboring genes Neighboring gene ERH mRNA splicing and mitosis factor Neighboring gene presenilin 1 Neighboring gene T cell receptor beta chain MC.7.G5-like Neighboring gene T-cell receptor beta chain C region-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045165.1 Chromosome 14 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
papilin
Names
papilin, proteoglycan like sulfated glycoprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045165.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    8028329..8051890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031579951.2 → XP_031435811.1  papilin

    UniProtKB/TrEMBL
    A0A6P8GF38
    Related
    ENSCHAP00020035121.1, ENSCHAT00020037488.1
    Conserved Domains (6) summary
    smart00408
    Location:979 → 1039
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:26 → 77
    TSP1; Thrombospondin type 1 repeats
    pfam00014
    Location:698 → 749
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam05986
    Location:182 → 295
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam07679
    Location:1057 → 1143
    I-set; Immunoglobulin I-set domain
    pfam08686
    Location:1160 → 1191
    PLAC; PLAC (protease and lacunin) domain
Nucleotide Protein
Heading Accession and Version

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