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crlf3 cytokine receptor-like factor 3 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105898856, updated on 18-Jun-2024

Summary

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Gene symbol
crlf3
Gene description
cytokine receptor-like factor 3
See related
Ensembl:ENSCHAG00020016916
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 1 NC_045152.1 (20782579..20796092)

Chromosome 1 - NC_045152.1Genomic Context describing neighboring genes Neighboring gene ArfGAP with dual PH domains 2 Neighboring gene ATPase family AAA domain containing 5a Neighboring gene polycomb protein suz12-A-like Neighboring gene nerve growth factor receptor a (TNFR superfamily, member 16)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045152.1 Chromosome 1 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokine receptor-like factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045152.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    20782579..20796092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012825960.3 → XP_012681414.1  cytokine receptor-like factor 3

    See identical proteins and their annotated locations for XP_012681414.1

    UniProtKB/TrEMBL
    A0A6P8FEN4
    Conserved Domains (2) summary
    cd00063
    Location:177 → 266
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR02168
    Location:4 → 139
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_012825958.3 → XP_012681412.1  cytokine receptor-like factor 3

    See identical proteins and their annotated locations for XP_012681412.1

    UniProtKB/TrEMBL
    A0A6P8FEN4
    Related
    ENSCHAP00020037993.1, ENSCHAT00020040807.1
    Conserved Domains (2) summary
    cd00063
    Location:177 → 266
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR02168
    Location:4 → 139
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_031571033.2 → XP_031426893.1  cytokine receptor-like factor 3

    UniProtKB/TrEMBL
    A0A6P8FEN4
    Related
    ENSCHAP00020037997.1, ENSCHAT00020040811.1
    Conserved Domains (2) summary
    cd00063
    Location:177 → 266
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR02168
    Location:4 → 139
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
Heading Accession and Version

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