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il16 interleukin 16 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105891129, updated on 18-Jun-2024

Summary

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Gene symbol
il16
Gene description
interleukin 16
See related
Ensembl:ENSCHAG00020005495
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 6 NC_045157.1 (30215562..30222351, complement)

Chromosome 6 - NC_045157.1Genomic Context describing neighboring genes Neighboring gene transmembrane channel-like protein 3 Neighboring gene StAR related lipid transfer domain containing 5 Neighboring gene cell migration-inducing and hyaluronan-binding protein-like Neighboring gene abhydrolase domain containing 17C, depalmitoylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045157.1 Chromosome 6 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CD4 receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in induction of positive chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pro-interleukin-16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045157.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    30215562..30222351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031569721.2 → XP_031425581.1  pro-interleukin-16 isoform X3

    UniProtKB/TrEMBL
    A0A6P8FPU6
    Conserved Domains (3) summary
    smart00228
    Location:792 → 879
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    PHA03247
    Location:193 → 496
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:673 → 749
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_031569720.2 → XP_031425580.1  pro-interleukin-16 isoform X2

    UniProtKB/TrEMBL
    A0A6P8FQ60
    Related
    ENSCHAP00020011002.1, ENSCHAT00020011865.1
    Conserved Domains (3) summary
    smart00228
    Location:792 → 879
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    PHA03247
    Location:193 → 522
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:673 → 749
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  3. XM_031569719.2 → XP_031425579.1  pro-interleukin-16 isoform X1

    UniProtKB/TrEMBL
    A0A6P8FI45
    Conserved Domains (3) summary
    smart00228
    Location:809 → 896
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    PHA03247
    Location:193 → 523
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:690 → 766
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
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