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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029933.1 RefSeqGene
- Range
-
5001..120886
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001172128.2 → NP_001165599.1 pro-interleukin-16 isoform 3
See identical proteins and their annotated locations for NP_001165599.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has multiple differences and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (3) is longer, compared to isoform 1.
- Source sequence(s)
-
AC036196, AC103858
- Consensus CDS
-
CCDS53966.1
- UniProtKB/Swiss-Prot
-
Q14005
- Related
- ENSP00000378155.2, ENST00000394660.6
- Conserved Domains (2) summary
-
- smart00228
Location:1233 → 1319
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00992
Location:217 → 300
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
NM_001352684.2 → NP_001339613.1 pro-interleukin-16 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC036196, AC103858
- Conserved Domains (3) summary
-
- smart00228
Location:624 → 710
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00992
Location:501 → 578
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- cl27818
Location:250 → 345
- COG1615; Uncharacterized membrane protein, UPF0182 family [Function unknown]
-
NM_001352685.2 → NP_001339614.1 pro-interleukin-16 isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC036196, AC103858
- Conserved Domains (3) summary
-
- smart00228
Location:1063 → 1149
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00992
Location:47 → 130
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- cl27818
Location:690 → 785
- COG1615; Uncharacterized membrane protein, UPF0182 family [Function unknown]
-
NM_001352686.2 → NP_001339615.1 pro-interleukin-16 isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC036196, AC103858
- Conserved Domains (3) summary
-
- smart00228
Location:1284 → 1370
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00992
Location:268 → 351
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- cl27818
Location:911 → 1006
- COG1615; Uncharacterized membrane protein, UPF0182 family [Function unknown]
-
NM_004513.6 → NP_004504.3 pro-interleukin-16 isoform 1
See identical proteins and their annotated locations for NP_004504.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform (1).
- Source sequence(s)
-
AC103858
- Consensus CDS
-
CCDS10317.1
- UniProtKB/Swiss-Prot
-
Q14005
- UniProtKB/TrEMBL
-
Q9UME6
- Related
- ENSP00000378147.2, ENST00000394652.6
- Conserved Domains (3) summary
-
- smart00228
Location:533 → 619
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00992
Location:410 → 487
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- cl23717
Location:347 → 432
- crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
-
NM_172217.5 → NP_757366.2 pro-interleukin-16 isoform 2
See identical proteins and their annotated locations for NP_757366.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and and 5' coding region and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) is longer at the N-terminus compared to isoform 1.
- Source sequence(s)
-
AC036196, AC103858
- Consensus CDS
-
CCDS42069.1
- UniProtKB/Swiss-Prot
-
Q14005
- Related
- ENSP00000508085.1, ENST00000683961.1
- Conserved Domains (2) summary
-
- smart00228
Location:1234 → 1320
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00992
Location:217 → 300
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
RNA
-
NR_148035.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC036196, AC103858