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opn3 opsin 3 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105890915, updated on 18-Jun-2024

Summary

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Gene symbol
opn3
Gene description
opsin 3
See related
Ensembl:ENSCHAG00020004714
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 13 NC_045164.1 (5936089..5943344)

Chromosome 13 - NC_045164.1Genomic Context describing neighboring genes Neighboring gene regulator of microtubule dynamics protein 2 Neighboring gene CDC42 effector protein (Rho GTPase binding) 3 Neighboring gene kynurenine 3-monooxygenase Neighboring gene zinc finger protein 571-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045164.1 Chromosome 13 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
opsin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045164.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    5936089..5943344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012817009.3 → XP_012672463.1  opsin-3

    UniProtKB/TrEMBL
    A0A6P3VHN9
    Related
    ENSCHAP00020009229.1, ENSCHAT00020010035.1
    Conserved Domains (1) summary
    cd15078
    Location:24 → 302
    7tmA_Encephalopsin; encephalopsins (opsin-3), member of the class A family of seven-transmembrane G protein-coupled receptors
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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