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ppm1f protein phosphatase, Mg2+/Mn2+ dependent, 1F [ Clupea harengus (Atlantic herring) ]

Gene ID: 105890042, updated on 18-Jun-2024

Summary

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Gene symbol
ppm1f
Gene description
protein phosphatase, Mg2+/Mn2+ dependent, 1F
See related
Ensembl:ENSCHAG00020026485
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 7 NC_045158.1 (5971519..5980594)

Chromosome 7 - NC_045158.1Genomic Context describing neighboring genes Neighboring gene RUN and SH3 domain containing 2 Neighboring gene DNA topoisomerase III beta Neighboring gene mitogen-activated protein kinase 1 Neighboring gene yippee-like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045158.1 Chromosome 7 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein phosphatase 1F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045158.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    5971519..5980594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012816011.3 → XP_012671465.2  protein phosphatase 1F

    UniProtKB/TrEMBL
    A0A6P3VHB6
    Related
    ENSCHAP00020060492.1, ENSCHAT00020065308.1
    Conserved Domains (1) summary
    cd00143
    Location:142 → 401
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
Nucleotide Protein
Heading Accession and Version

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