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zmat4a zinc finger, matrin-type 4a [ Clupea harengus (Atlantic herring) ]

Gene ID: 105889874, updated on 18-Jun-2024

Summary

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Gene symbol
zmat4a
Gene description
zinc finger, matrin-type 4a
See related
Ensembl:ENSCHAG00020029284
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
zmat4
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 7 NC_045158.1 (9934185..10024889, complement)

Chromosome 7 - NC_045158.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 28 Neighboring gene transcriptional and immune response regulator a Neighboring gene secreted frizzled-related protein 1a Neighboring gene lysyl oxidase-like 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045158.1 Chromosome 7 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger matrin-type protein 4
Names
zinc finger matrin-type 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045158.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    9934185..10024889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012815807.3 → XP_012671261.2  zinc finger matrin-type protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A6P3VGR5
    Related
    ENSCHAP00020066074.1, ENSCHAT00020072131.1
    Conserved Domains (3) summary
    smart00451
    Location:169 → 202
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:174 → 196
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:226 → 249
    zf-met; Zinc-finger of C2H2 type

  2. XM_031570442.2 → XP_031426302.1  zinc finger matrin-type protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A6P8FT63
    Related
    ENSCHAP00020066073.1, ENSCHAT00020072129.1
    Conserved Domains (3) summary
    smart00451
    Location:191 → 224
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:196 → 218
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12874
    Location:248 → 271
    zf-met; Zinc-finger of C2H2 type
Nucleotide Protein
Heading Accession and Version

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