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PNPT1 polyribonucleotide nucleotidyltransferase 1 [ Microcebus murinus (gray mouse lemur) ]

Gene ID: 105878432, updated on 13-Mar-2024

Summary

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Gene symbol
PNPT1
Gene description
polyribonucleotide nucleotidyltransferase 1
See related
Ensembl:ENSMICG00000009369
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcebus murinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
28
Annotation release Status Assembly Chr Location
101 current Mmur_3.0 (GCF_000165445.2) 4 NC_033663.1 (3602408..3644399, complement)
100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012197086.1 (2530193..2572184, complement)

Chromosome 4 - NC_033663.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 36 Neighboring gene protein phosphatase 4 regulatory subunit 3B Neighboring gene uncharacterized LOC105878434 Neighboring gene uncharacterized LOC105878444 Neighboring gene EGF containing fibulin extracellular matrix protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyribonucleotide nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyribonucleotide nucleotidyltransferase 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmur_3.0 Primary Assembly

Genomic

  1. NC_033663.1 Reference Mmur_3.0 Primary Assembly

    Range
    3602408..3644399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012777833.1 → XP_012633287.1  polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8B7H9E1
    Related
    ENSMICP00000008559.2, ENSMICT00000009402.3
    Conserved Domains (6) summary
    smart00316
    Location:679 → 750
    S1; Ribosomal protein S1-like RNA-binding domain
    cd11363
    Location:45 → 273
    RNase_PH_PNPase_1; Polyribonucleotide nucleotidyltransferase, repeat 1
    cd11364
    Location:366 → 596
    RNase_PH_PNPase_2; Polyribonucleotide nucleotidyltransferase, repeat 2
    PRK11824
    Location:45 → 752
    PRK11824; polynucleotide phosphorylase/polyadenylase; Provisional
    pfam03726
    Location:282 → 363
    PNPase; Polyribonucleotide nucleotidyltransferase, RNA binding domain
    cl00098
    Location:605 → 664
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

  2. XM_012777834.2 → XP_012633288.1  polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8B7HC52
    Conserved Domains (6) summary
    smart00316
    Location:599 → 670
    S1; Ribosomal protein S1-like RNA-binding domain
    cd11364
    Location:286 → 516
    RNase_PH_PNPase_2; Polyribonucleotide nucleotidyltransferase, repeat 2
    PRK11824
    Location:1 → 672
    PRK11824; polynucleotide phosphorylase/polyadenylase; Provisional
    pfam03726
    Location:202 → 283
    PNPase; Polyribonucleotide nucleotidyltransferase, RNA binding domain
    cl00098
    Location:525 → 584
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cl03114
    Location:1 → 193
    RNase_PH; RNase PH-like 3'-5' exoribonucleases
Nucleotide Protein
Heading Accession and Version

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