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OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105820867, updated on 13-Mar-2024

Summary

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Gene symbol
OGFOD1
Gene description
2-oxoglutarate and iron dependent oxygenase domain containing 1
See related
Ensembl:ENSPCOG00000023785
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See OGFOD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012151286.1 (561525..583236)

NW_012151286.1Genomic Context describing neighboring genes Neighboring gene autocrine motility factor receptor Neighboring gene nudix hydrolase 21 Neighboring gene Bardet-Biedl syndrome 2 Neighboring gene metallothionein-I, hippocampal

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012151286.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptidyl-proline dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-proline hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of translational termination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase OGFOD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012151286.1 Reference Pcoq_1.0 Primary Assembly

    Range
    561525..583236
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012657438.1 → XP_012512892.1  prolyl 3-hydroxylase OGFOD1

    UniProtKB/TrEMBL
    A0A2K6GAM2, A0A2K6GAN8
    Related
    ENSPCOP00000023303.1, ENSPCOT00000033981.1
    Conserved Domains (2) summary
    smart00702
    Location:72 → 238
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    cl21496
    Location:262 → 537
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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