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USP38 ubiquitin specific peptidase 38 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105808973, updated on 13-Mar-2024

Summary

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Gene symbol
USP38
Gene description
ubiquitin specific peptidase 38
See related
Ensembl:ENSPCOG00000027643
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012143301.1 (2396832..2443864)

NW_012143301.1Genomic Context describing neighboring genes Neighboring gene interleukin 15 Neighboring gene inositol polyphosphate-4-phosphatase type II B Neighboring gene GRB2 associated binding protein 1 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012143301.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012143301.1 Reference Pcoq_1.0 Primary Assembly

    Range
    2396832..2443864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012642730.1 → XP_012498184.1  LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 38

    UniProtKB/TrEMBL
    A0A2K6GUG4
    Related
    ENSPCOP00000029868.1, ENSPCOT00000040814.1
    Conserved Domains (2) summary
    cd02664
    Location:446 → 944
    Peptidase_C19H; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:445 → 943
    UCH; Ubiquitin carboxyl-terminal hydrolase
Nucleotide Protein
Heading Accession and Version

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