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LOC105802880 squamosa promoter-binding-like protein 1 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105802880, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105802880
Gene description
squamosa promoter-binding-like protein 1
Locus tag
B456_007G116100
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 11 NC_068575.1 (54151240..54158001)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 7 NC_026935.1 (9037076..9043751, complement)

Chromosome 11 - NC_068575.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128034542 Neighboring gene uncharacterized LOC105800939 Neighboring gene pleiotropic drug resistance protein 3 Neighboring gene pleiotropic drug resistance protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068575.1 Reference ASM2569854v1 Primary Assembly

    Range
    54151240..54158001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052624259.1 → XP_052480219.1  squamosa promoter-binding-like protein 1

    UniProtKB/TrEMBL
    A0A0D2P7I5

  2. XM_012634784.2 → XP_012490238.1  squamosa promoter-binding-like protein 1

    See identical proteins and their annotated locations for XP_012490238.1

    UniProtKB/TrEMBL
    A0A0D2P7I5
    Conserved Domains (3) summary
    cd00204
    Location:758 → 869
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam03110
    Location:155 → 229
    SBP; SBP domain
    sd00045
    Location:758 → 808
    ANK; ANK repeat [structural motif]
Nucleotide Protein
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