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ZC3H12B zinc finger CCCH-type containing 12B [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105586170, updated on 13-Mar-2024

Summary

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Gene symbol
ZC3H12B
Gene description
zinc finger CCCH-type containing 12B
See related
Ensembl:ENSCATG00000044845
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012009691.1 (6694424..7113985, complement)

NW_012009691.1Genomic Context describing neighboring genes Neighboring gene moesin Neighboring gene LAS1 like ribosome biogenesis factor Neighboring gene thioredoxin-like protein AAED1 pseudogene Neighboring gene mortality factor 4-like protein 1 pseudogene Neighboring gene zinc finger C4H2-type containing Neighboring gene biogenesis of lysosome-related organelles complex 1 subunit 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012009691.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ribonuclease ZC3H12B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012009691.1 Reference Caty_1.0

    Range
    6694424..7113985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012060927.1 → XP_011916317.1  probable ribonuclease ZC3H12B

    See identical proteins and their annotated locations for XP_011916317.1

    UniProtKB/TrEMBL
    A0A2K5P4X7
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  2. XM_012060926.1 → XP_011916316.1  probable ribonuclease ZC3H12B

    See identical proteins and their annotated locations for XP_011916316.1

    UniProtKB/TrEMBL
    A0A2K5P4X7
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  3. XM_012060924.1 → XP_011916314.1  probable ribonuclease ZC3H12B

    See identical proteins and their annotated locations for XP_011916314.1

    UniProtKB/TrEMBL
    A0A2K5P4X7
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  4. XM_012060922.1 → XP_011916312.1  probable ribonuclease ZC3H12B

    See identical proteins and their annotated locations for XP_011916312.1

    UniProtKB/TrEMBL
    A0A2K5P4X7
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  5. XM_012060920.1 → XP_011916310.1  probable ribonuclease ZC3H12B

    See identical proteins and their annotated locations for XP_011916310.1

    UniProtKB/TrEMBL
    A0A2K5P4X7
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  6. XM_012060923.1 → XP_011916313.1  probable ribonuclease ZC3H12B

    See identical proteins and their annotated locations for XP_011916313.1

    UniProtKB/TrEMBL
    A0A2K5P4X7
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  7. XM_012060921.1 → XP_011916311.1  probable ribonuclease ZC3H12B

    See identical proteins and their annotated locations for XP_011916311.1

    UniProtKB/TrEMBL
    A0A2K5P4X7
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  8. XM_012060919.1 → XP_011916309.1  probable ribonuclease ZC3H12B

    See identical proteins and their annotated locations for XP_011916309.1

    UniProtKB/TrEMBL
    A0A2K5P4X7
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  9. XM_012060925.1 → XP_011916315.1  probable ribonuclease ZC3H12B

    See identical proteins and their annotated locations for XP_011916315.1

    UniProtKB/TrEMBL
    A0A2K5P4X7
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  10. XM_012060918.1 → XP_011916308.1  probable ribonuclease ZC3H12B

    See identical proteins and their annotated locations for XP_011916308.1

    UniProtKB/TrEMBL
    A0A2K5P4X7
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  11. XM_012060928.1 → XP_011916318.1  probable ribonuclease ZC3H12B

    See identical proteins and their annotated locations for XP_011916318.1

    UniProtKB/TrEMBL
    A0A2K5P4X7
    Related
    ENSCATP00000044766.1, ENSCATT00000069208.1
    Conserved Domains (4) summary
    cd18729
    Location:193 → 323
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:108 → 149
    UBA_6; UBA-like domain
    pfam18044
    Location:360 → 378
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:796 → 830
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain
Nucleotide Protein
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