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PHF21A PHD finger protein 21A [ Colobus angolensis palliatus ]

Gene ID: 105527108, updated on 13-Mar-2024

Summary

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Gene symbol
PHF21A
Gene description
PHD finger protein 21A
See related
Ensembl:ENSCANG00000041838
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012119710.1 (2985915..3182539, complement)

NW_012119710.1Genomic Context describing neighboring genes Neighboring gene peroxisomal biogenesis factor 16 Neighboring gene LARGE xylosyl- and glucuronyltransferase 2 Neighboring gene filamin-binding LIM protein 1 pseudogene Neighboring gene cAMP responsive element binding protein 3 like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012119710.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 21A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012119710.1 Reference Cang.pa_1.0

    Range
    2985915..3182539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011963301.1 → XP_011818691.1  PHD finger protein 21A isoform X2

    See identical proteins and their annotated locations for XP_011818691.1

    UniProtKB/TrEMBL
    A0A2K5K5K9, A0A2K5K5L5
    Related
    ENSCANP00000036357.1, ENSCANT00000059606.1
    Conserved Domains (2) summary
    COG5034
    Location:374 → 536
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15523
    Location:490 → 532
    PHD_PHF21A; PHD finger found in PHD finger protein 21A (PHF21A)

  2. XM_011963302.1 → XP_011818692.1  PHD finger protein 21A isoform X3

    See identical proteins and their annotated locations for XP_011818692.1

    UniProtKB/TrEMBL
    A0A2K5K5K9, A0A2K5K5L6
    Related
    ENSCANP00000036362.1, ENSCANT00000059611.1
    Conserved Domains (1) summary
    cd15523
    Location:444 → 486
    PHD_PHF21A; PHD finger found in PHD finger protein 21A (PHF21A)

  3. XM_011963300.1 → XP_011818690.1  PHD finger protein 21A isoform X1

    See identical proteins and their annotated locations for XP_011818690.1

    UniProtKB/TrEMBL
    A0A2K5K5K9
    Related
    ENSCANP00000036369.1, ENSCANT00000059618.1
    Conserved Domains (2) summary
    COG5034
    Location:375 → 537
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15523
    Location:491 → 533
    PHD_PHF21A; PHD finger found in PHD finger protein 21A (PHF21A)
Nucleotide Protein
Heading Accession and Version

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