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ECM1 extracellular matrix protein 1 [ Colobus angolensis palliatus ]

Gene ID: 105508836, updated on 13-Mar-2024

Summary

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Gene symbol
ECM1
Gene description
extracellular matrix protein 1
See related
Ensembl:ENSCANG00000039234
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012114810.1 (712502..718665)

NW_012114810.1Genomic Context describing neighboring genes Neighboring gene regulation of nuclear pre-mRNA domain containing 2 Neighboring gene uncharacterized LOC105508837 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene uncharacterized LOC105508838 Neighboring gene ADAMTS like 4 Neighboring gene MCL1 apoptosis regulator, BCL2 family member

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012114810.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of bone mineralization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
extracellular matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012114810.1 Reference Cang.pa_1.0

    Range
    712502..718665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011937779.1 → XP_011793169.1  extracellular matrix protein 1 isoform X2

    Conserved Domains (1) summary
    pfam05782
    Location:6 → 540
    ECM1; Extracellular matrix protein 1 (ECM1)

  2. XM_011937780.1 → XP_011793170.1  extracellular matrix protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2K5JQJ4
    Related
    ENSCANP00000031116.1, ENSCANT00000054331.1
    Conserved Domains (1) summary
    pfam05782
    Location:6 → 415
    ECM1; Extracellular matrix protein 1 (ECM1)

  3. XM_011937778.1 → XP_011793168.1  extracellular matrix protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5JQJ2
    Related
    ENSCANP00000031114.1, ENSCANT00000054329.1
    Conserved Domains (2) summary
    pfam05782
    Location:6 → 567
    ECM1; Extracellular matrix protein 1 (ECM1)
    cl00031
    Location:221 → 297
    ALBUMIN; Albumin domain, contains five or six internal disulphide bonds; albuminoid superfamily includes alpha-fetoprotein which binds various cations, fatty acids and bilirubin; vitamin D-binding protein which binds to vitamin D, its metabolites, and fatty acids; ...
Nucleotide Protein
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