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TFEB transcription factor EB [ Camelus dromedarius (Arabian camel) ]

Gene ID: 105086750, updated on 6-Jun-2024

Summary

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Gene symbol
TFEB
Gene description
transcription factor EB
Locus tag
Cadr_000021864
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus dromedarius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_04 current mCamDro1.pat (GCF_036321535.1) 19 NC_087454.1 (27490424..27536038, complement)
101 previous assembly CamDro3 (GCF_000803125.2) 20 NC_044530.1 (13017062..13064598)

Chromosome 19 - NC_087454.1Genomic Context describing neighboring genes Neighboring gene forkhead box P4 Neighboring gene MyoD family inhibitor Neighboring gene progastricsin Neighboring gene prickle planar cell polarity protein 4 Neighboring gene fibroblast growth factor receptor substrate 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in humoral immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor EB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036321535.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCamDro1.pat

Genomic

  1. NC_087454.1 Reference mCamDro1.pat

    Range
    27490424..27536038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031434725.2 → XP_031290585.1  transcription factor EB

    UniProtKB/TrEMBL
    A0A5N4CT93
    Conserved Domains (3) summary
    pfam11851
    Location:319 → 474
    DUF3371; Domain of unknown function (DUF3371)
    pfam15951
    Location:4 → 160
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
    cd18927
    Location:224 → 314
    bHLHzip_TFEB; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EB (TFEB) and similar proteins

  2. XM_064476486.1 → XP_064332556.1  transcription factor EB

    UniProtKB/TrEMBL
    A0A5N4CT93

  3. XM_064476485.1 → XP_064332555.1  transcription factor EB

    UniProtKB/TrEMBL
    A0A5N4CT93
Nucleotide Protein
Heading Accession and Version

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