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SUPT5H SPT5 homolog, DSIF elongation factor subunit [ Camelus bactrianus (Bactrian camel) ]

Gene ID: 105062842, updated on 13-Mar-2024

Summary

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Gene symbol
SUPT5H
Gene description
SPT5 homolog, DSIF elongation factor subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus bactrianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
102 current Ca_bactrianus_MBC_1.0 (GCF_000767855.1) Unplaced Scaffold NW_011511566.1 (455803..483221)

NW_011511566.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology and RhoGEF domain containing G2 Neighboring gene ribosomal protein S16 Neighboring gene translocase of inner mitochondrial membrane 50 Neighboring gene delta like canonical Notch ligand 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011511566 Unplaced Scaffold Reference Ca_bactrianus_MBC_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DSIF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor SPT5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelus bactrianus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ca_bactrianus_MBC_1.0 Primary Assembly

Genomic

  1. NW_011511566.1 Reference Ca_bactrianus_MBC_1.0 Primary Assembly

    Range
    455803..483221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045510872.1 → XP_045366828.1  transcription elongation factor SPT5 isoform X4

    UniProtKB/TrEMBL
    A0A9W3EEV9
    Conserved Domains (4) summary
    cd09888
    Location:37 → 124
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:193 → 824
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:135 → 172
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06086
    Location:887 → 943
    KOW_Spt5_6; KOW domain of Spt5, repeat 6

  2. XM_010947233.2 → XP_010945535.1  transcription elongation factor SPT5 isoform X4

    UniProtKB/TrEMBL
    A0A9W3EEV9
    Conserved Domains (4) summary
    cd09888
    Location:37 → 124
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:193 → 824
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:135 → 172
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06086
    Location:887 → 943
    KOW_Spt5_6; KOW domain of Spt5, repeat 6

  3. XM_045510869.1 → XP_045366825.1  transcription elongation factor SPT5 isoform X1

    UniProtKB/TrEMBL
    A0A9W3FUC4

  4. XM_045510868.1 → XP_045366824.1  transcription elongation factor SPT5 isoform X1

    UniProtKB/TrEMBL
    A0A9W3FUC4

  5. XM_045510870.1 → XP_045366826.1  transcription elongation factor SPT5 isoform X2

    UniProtKB/TrEMBL
    A0A9W3FUC6

  6. XM_045510871.1 → XP_045366827.1  transcription elongation factor SPT5 isoform X3

    UniProtKB/TrEMBL
    A0A9W3FUC9
Nucleotide Protein
Heading Accession and Version

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