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spata17 spermatogenesis associated 17 [ Esox lucius (northern pike) ]

Gene ID: 105015727, updated on 18-Jun-2024

Summary

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Gene symbol
spata17
Gene description
spermatogenesis associated 17
See related
Ensembl:ENSELUG00000002110
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See spata17 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 15 NC_047583.1 (8900852..8955523, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG15 NC_025982.4 (9075106..9129401, complement)

Chromosome 15 - NC_047583.1Genomic Context describing neighboring genes Neighboring gene lipin 1a Neighboring gene growth regulating estrogen receptor binding 1 Neighboring gene uncharacterized LOC117595586 Neighboring gene estrogen-related receptor gamma a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in establishment of meiotic spindle localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spindle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in spindle pole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-associated protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047583.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    8900852..8955523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010879075.3 → XP_010877377.2  spermatogenesis-associated protein 17

    UniProtKB/TrEMBL
    A0A3P8X7Z4
    Related
    ENSELUP00000000525.2, ENSELUT00000018922.3
    Conserved Domains (2) summary
    COG5022
    Location:86 → 159
    COG5022; Myosin heavy chain [General function prediction only]
    cd22307
    Location:31 → 66
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif

RNA

  1. XR_003782952.2 RNA Sequence

  2. XR_003782951.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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