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otud6b OTU deubiquitinase 6B [ Esox lucius (northern pike) ]

Gene ID: 105006705, updated on 18-Jun-2024

Summary

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Gene symbol
otud6b
Gene description
OTU deubiquitinase 6B
See related
Ensembl:ENSELUG00000038401
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 10 NC_047578.1 (2136226..2140201)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG10 NC_025977.4 (2170519..2174468)

Chromosome 10 - NC_047578.1Genomic Context describing neighboring genes Neighboring gene N-terminal EF-hand calcium binding protein 1 Neighboring gene intelectin Neighboring gene phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 Neighboring gene leucine rich repeat containing 69 Neighboring gene RUNX1 partner transcriptional co-repressor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
deubiquitinase OTUD6B
Names
OTU domain containing 6B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047578.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    2136226..2140201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029122797.2 → XP_028978630.2  deubiquitinase OTUD6B

    UniProtKB/TrEMBL
    A0A3P9A7B3
    Related
    ENSELUP00000037071.3, ENSELUT00000039925.3
    Conserved Domains (2) summary
    COG5539
    Location:2 → 287
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    pfam02338
    Location:159 → 283
    OTU; OTU-like cysteine protease

  2. XM_029122796.2 → XP_028978629.2  deubiquitinase OTUD6B

    UniProtKB/TrEMBL
    A0A3P9A7B3
    Conserved Domains (2) summary
    COG5539
    Location:2 → 287
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    pfam02338
    Location:159 → 283
    OTU; OTU-like cysteine protease
Nucleotide Protein
Heading Accession and Version

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