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igsf10 immunoglobulin superfamily, member 10 [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104954470, updated on 12-Sep-2024

Summary

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Gene symbol
igsf10
Gene description
immunoglobulin superfamily, member 10
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Orthologs
human zebrafish all
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Genomic context

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See igsf10 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011356068.1 (37201..48726, complement)

NW_011356068.1Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2Y13 Neighboring gene purinergic receptor P2Y12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011356068.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
immunoglobulin superfamily member 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011356068.1 Reference NC01 Primary Assembly

    Range
    37201..48726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010781578.1 → XP_010779880.1  immunoglobulin superfamily member 10

    Conserved Domains (11) summary
    cd00096
    Location:2081 → 2154
    Ig; Immunoglobulin domain
    smart00408
    Location:1892 → 1951
    IGc2; Immunoglobulin C-2 Type
    smart00082
    Location:222 → 283
    LRRCT; Leucine rich repeat C-terminal domain
    smart00409
    Location:1299 → 1377
    IG; Immunoglobulin
    smart00410
    Location:1390 → 1473
    IG_like; Immunoglobulin like
    COG5347
    Location:964 → 1189
    COG5347; GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
    pfam07679
    Location:2063 → 2151
    I-set; Immunoglobulin I-set domain
    sd00033
    Location:42 → 61
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:85 → 123
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:108 → 168
    LRR_8; Leucine rich repeat
    cl11960
    Location:1592 → 1668
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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