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vps4b vacuolar protein sorting 4 homolog B [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104918295, updated on 12-Mar-2024

Summary

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Gene symbol
vps4b
Gene description
vacuolar protein sorting 4 homolog B
Locus tag
EH28_25238
See related
Ensembl:ENSLCRG00005020088
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: II
Exon count:
14
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) II NC_040012.1 (13194703..13204124)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017608489.1 (1400542..1409987)

Chromosome II - NC_040012.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat protein 39C Neighboring gene laminin subunit alpha 3 Neighboring gene 3-ketodihydrosphingosine reductase Neighboring gene BCL2 apoptosis regulator b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 4B
Names
Vacuolar protein sorting-associated protein 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040012.1 Reference L_crocea_2.0 Primary Assembly

    Range
    13194703..13204124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010729999.3 → XP_010728301.1  vacuolar protein sorting-associated protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A6G0IH99
    Related
    ENSLCRP00005053655.1, ENSLCRT00005054520.1
    Conserved Domains (3) summary
    COG0464
    Location:159 → 419
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    pfam09336
    Location:445 → 505
    Vps4_C; Vps4 C terminal oligomerization domain
    cl00299
    Location:76 → 138
    MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...

  2. XM_010730000.3 → XP_010728302.1  vacuolar protein sorting-associated protein 4B isoform X2

    UniProtKB/TrEMBL
    A0A6G0IH99
    Related
    ENSLCRP00005053657.1, ENSLCRT00005054522.1
    Conserved Domains (5) summary
    smart00382
    Location:160 → 296
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:164 → 294
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:375 → 435
    Vps4_C; Vps4 C terminal oligomerization domain
    cl00299
    Location:5 → 68
    MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
    cl21455
    Location:127 → 183
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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