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Traf4 TNF receptor associated factor 4 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104874949, updated on 12-Mar-2024

Summary

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Gene symbol
Traf4
Gene description
TNF receptor associated factor 4
Locus tag
H920_13072
See related
Ensembl:ENSFDAG00000015295
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900925.1 (17952855..17958869, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011045963.1 (4314286..4320300, complement)

NW_022900925.1Genomic Context describing neighboring genes Neighboring gene Era like 12S mitochondrial rRNA chaperone 1 Neighboring gene family with sequence similarity 222 member B Neighboring gene NIMA related kinase 8 Neighboring gene small nucleolar RNA Z17 Neighboring gene TLC domain containing 1 Neighboring gene ribosomal protein L23a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of NF-kappaB-inducing kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900925.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    17952855..17958869 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010642290.1 → XP_010640592.1  TNF receptor-associated factor 4

    UniProtKB/TrEMBL
    A0A091D0F4
    Related
    ENSFDAP00000006562.1, ENSFDAT00000019858.1
    Conserved Domains (3) summary
    cd00162
    Location:1 → 31
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd03781
    Location:284 → 439
    MATH_TRAF4; Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter ...
    pfam02176
    Location:186 → 245
    zf-TRAF; TRAF-type zinc finger
Nucleotide Protein
Heading Accession and Version

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