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Ocln occludin [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104871409, updated on 12-Mar-2024

Summary

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Gene symbol
Ocln
Gene description
occludin
Locus tag
H920_10877
See related
Ensembl:ENSFDAG00000009041
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900913.1 (53914546..53959092)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011045476.1 (7434698..7479366)

NW_022900913.1Genomic Context describing neighboring genes Neighboring gene RAD17 checkpoint clamp loader component Neighboring gene MARVEL domain containing 2 Neighboring gene U6 spliceosomal RNA Neighboring gene general transcription factor IIH subunit 2 Neighboring gene NLR family apoptosis inhibitory protein Neighboring gene tyrosyl-DNA phosphodiesterase 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
occludin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900913.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    53914546..53959092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010637313.3 → XP_010635615.1  occludin

    See identical proteins and their annotated locations for XP_010635615.1

    UniProtKB/TrEMBL
    A0A091DBC1
    Related
    ENSFDAP00000019588.1
    Conserved Domains (2) summary
    pfam01284
    Location:58 → 264
    MARVEL; Membrane-associating domain
    pfam07303
    Location:424 → 519
    Occludin_ELL; Occludin homology domain

  2. XM_010637314.3 → XP_010635616.1  occludin

    See identical proteins and their annotated locations for XP_010635616.1

    UniProtKB/TrEMBL
    A0A091DBC1
    Conserved Domains (2) summary
    pfam01284
    Location:58 → 264
    MARVEL; Membrane-associating domain
    pfam07303
    Location:424 → 519
    Occludin_ELL; Occludin homology domain
Nucleotide Protein
Heading Accession and Version

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