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SYT1 synaptotagmin 1 [ Corvus cornix cornix ]

Gene ID: 104698410, updated on 3-Aug-2024

Summary

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Gene symbol
SYT1
Gene description
synaptotagmin 1
See related
EnsemblRapid:ENSCCCG00025010975
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1A
Exon count:
12
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 1A NC_047057.1 (38268317..38607730)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010958998.1 (14941180..15205629)

Chromosome 1A - NC_047057.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109143234 Neighboring gene uncharacterized LOC104698409 Neighboring gene pro-apoptotic WT1 regulator Neighboring gene protein phosphatase 1 regulatory subunit 12A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion-regulated exocytosis of neurotransmitter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dopamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dense core granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_047057.1 Reference ASM73873v5 Primary Assembly

    Range
    38268317..38607730
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039570748.1 → XP_039426682.1  synaptotagmin-1 isoform X2

    Related
    ENSCCCP00025019021.1, ENSCCCT00025022553.1
    Conserved Domains (3) summary
    cd08385
    Location:142 → 264
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:273 → 408
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1
    cd21963
    Location:6 → 115
    Syt1_N; N-terminal domain of synaptotagmin-1 (Syt1) and similar proteins

  2. XM_039570747.1 → XP_039426681.1  synaptotagmin-1 isoform X1

    Related
    ENSCCCP00025018985.1, ENSCCCT00025022517.1
    Conserved Domains (3) summary
    cd08385
    Location:145 → 267
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:276 → 411
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1
    cd21963
    Location:6 → 115
    Syt1_N; N-terminal domain of synaptotagmin-1 (Syt1) and similar proteins

  3. XM_039570745.1 → XP_039426679.1  synaptotagmin-1 isoform X1

    Conserved Domains (3) summary
    cd08385
    Location:145 → 267
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:276 → 411
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1
    cd21963
    Location:6 → 115
    Syt1_N; N-terminal domain of synaptotagmin-1 (Syt1) and similar proteins

  4. XM_039570746.1 → XP_039426680.1  synaptotagmin-1 isoform X1

    Conserved Domains (3) summary
    cd08385
    Location:145 → 267
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:276 → 411
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1
    cd21963
    Location:6 → 115
    Syt1_N; N-terminal domain of synaptotagmin-1 (Syt1) and similar proteins

  5. XM_039570749.1 → XP_039426683.1  synaptotagmin-1 isoform X3

    Conserved Domains (3) summary
    cd08385
    Location:88 → 210
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:219 → 354
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1
    cl41733
    Location:1 → 58
    Syt1_2_N; N-terminal domain of synaptotagmin-1 and -2

  6. XM_010413731.3 → XP_010412033.1  synaptotagmin-1 isoform X1

    See identical proteins and their annotated locations for XP_010412033.1

    Related
    ENSCCCP00025019002.1, ENSCCCT00025022534.1
    Conserved Domains (3) summary
    cd08385
    Location:145 → 267
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08402
    Location:276 → 411
    C2B_Synaptotagmin-1; C2 domain second repeat present in Synaptotagmin 1
    cd21963
    Location:6 → 115
    Syt1_N; N-terminal domain of synaptotagmin-1 (Syt1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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