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PATZ1 POZ/BTB and AT hook containing zinc finger 1 [ Corvus cornix cornix ]

Gene ID: 104688761, updated on 3-Aug-2024

Summary

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Gene symbol
PATZ1
Gene description
POZ/BTB and AT hook containing zinc finger 1
See related
EnsemblRapid:ENSCCCG00025000554
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 15 NC_046345.1 (10028770..10053018)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959419.1 (793389..817267, complement)

Chromosome 15 - NC_046345.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E nuclear import factor 1 Neighboring gene developmentally regulated GTP binding protein 1 Neighboring gene phosphoinositide-3-kinase interacting protein 1 Neighboring gene uncharacterized LOC109144423 Neighboring gene LIM domain kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
POZ-, AT hook-, and zinc finger-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046345.1 Reference ASM73873v5 Primary Assembly

    Range
    10028770..10053018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039561223.1 → XP_039417157.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X5

    Conserved Domains (5) summary
    COG5048
    Location:372 → 454
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:332 → 409
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:360 → 380
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18207
    Location:16 → 169
    BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
    pfam13912
    Location:445 → 470
    zf-C2H2_6; C2H2-type zinc finger

  2. XM_039561221.1 → XP_039417155.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X3

    Related
    ENSCCCP00025001003.1, ENSCCCT00025001131.1
    Conserved Domains (5) summary
    COG5048
    Location:360 → 609
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:360 → 380
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:588 → 609
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18207
    Location:16 → 169
    BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
    pfam16637
    Location:519 → 585
    zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz

  3. XM_019285075.3 → XP_019140620.3  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X1

    Conserved Domains (7) summary
    COG5048
    Location:384 → 530
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:332 → 409
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:360 → 380
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:634 → 655
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18207
    Location:16 → 169
    BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
    pfam16637
    Location:563 → 631
    zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
    cd20908
    Location:511 → 552
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  4. XM_039561222.1 → XP_039417156.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X4

    Conserved Domains (7) summary
    COG5048
    Location:384 → 454
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:332 → 409
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:360 → 380
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:564 → 585
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18207
    Location:16 → 169
    BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
    pfam13912
    Location:445 → 470
    zf-C2H2_6; C2H2-type zinc finger
    pfam16637
    Location:495 → 561
    zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz

  5. XM_039561220.1 → XP_039417154.1  POZ-, AT hook-, and zinc finger-containing protein 1 isoform X2

    Related
    ENSCCCP00025001000.1, ENSCCCT00025001128.1
    Conserved Domains (6) summary
    COG5048
    Location:384 → 521
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:332 → 409
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:360 → 380
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:610 → 631
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18207
    Location:16 → 169
    BTB_POZ_ZBTB19_PATZ1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in POZ-, AT hook-, and zinc finger-containing protein 1 (PATZ1)
    pfam16637
    Location:539 → 607
    zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz

RNA

  1. XR_005603185.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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