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POGZ pogo transposable element derived with ZNF domain [ Balearica regulorum gibbericeps (East African grey crowned-crane) ]

Gene ID: 104633583, updated on 3-Aug-2024

Summary

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Gene symbol
POGZ
Gene description
pogo transposable element derived with ZNF domain
Gene type
protein coding
RefSeq status
MODEL
Organism
Balearica regulorum gibbericeps (sub-species: gibbericeps)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Gruiformes; Gruidae; Balearica
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM70989v1 (GCF_000709895.1) Unplaced Scaffold NW_010748512.1 (4676..29450, complement)

NW_010748512.1Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010748512.1 Unplaced Scaffold Reference ASM70989v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pogo transposable element with ZNF domain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Balearica regulorum gibbericeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70989v1 Primary Assembly

Genomic

  1. NW_010748512.1 Reference ASM70989v1 Primary Assembly

    Range
    4676..29450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010299829.1 → XP_010298131.1  pogo transposable element with ZNF domain

    Conserved Domains (5) summary
    smart00674
    Location:974 → 1035
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    sd00017
    Location:523 → 544
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:487 → 520
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13518
    Location:925 → 968
    HTH_28; Helix-turn-helix domain
    cl21549
    Location:1109 → 1233
    rve; Integrase core domain
Nucleotide Protein
Heading Accession and Version

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