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PDLIM3 PDZ and LIM domain 3 [ Phaethon lepturus (White-tailed tropicbird) ]

Gene ID: 104626007, updated on 3-Aug-2024

Summary

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Gene symbol
PDLIM3
Gene description
PDZ and LIM domain 3
Locus tag
N335_09143
Gene type
protein coding
RefSeq status
MODEL
Organism
Phaethon lepturus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Phaethontimorphae; Phaethontiformes; Phaethontidae; Phaethon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM68728v1 (GCF_000687285.1) Unplaced Scaffold NW_010560982.1 (173269..197044)

NW_010560982.1Genomic Context describing neighboring genes Neighboring gene sorbin and SH3 domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010560982.1 Unplaced Scaffold Reference ASM68728v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ and LIM domain protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phaethon lepturus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68728v1

Genomic

  1. NW_010560982.1 Reference ASM68728v1

    Range
    173269..197044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010293815.1 → XP_010292117.1  PDZ and LIM domain protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A091TTL9
    Conserved Domains (3) summary
    cd09450
    Location:293 → 345
    LIM_ALP; This family represents the LIM domain of ALP, actinin-associated LIM protein
    cd00992
    Location:2 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:184 → 264
    DUF4749; Domain of unknown function (DUF4749)

  2. XM_010293816.1 → XP_010292118.1  PDZ and LIM domain protein 3 isoform X2

    Conserved Domains (3) summary
    cd09450
    Location:245 → 297
    LIM_ALP; This family represents the LIM domain of ALP, actinin-associated LIM protein
    cd00992
    Location:2 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:137 → 216
    DUF4749; Domain of unknown function (DUF4749)
Nucleotide Protein
Heading Accession and Version

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