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PDE6B phosphodiesterase 6B [ Colius striatus (speckled mousebird) ]

Gene ID: 104562515, updated on 3-Aug-2024

Summary

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Gene symbol
PDE6B
Gene description
phosphodiesterase 6B
Locus tag
N325_02399
Gene type
protein coding
RefSeq status
MODEL
Organism
Colius striatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Coliiformes; Coliidae; Colius
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Z
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_12 current bColStr4.1.hap1 (GCF_028858725.1) Z NC_084790.1 (34174227..34194645, complement)
100 previous assembly ASM69071v1 (GCF_000690715.1) Unplaced Scaffold NW_010713336.1 (5815..26298, complement)

Chromosome Z - NC_084790.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 175 Neighboring gene ATP synthase membrane subunit e Neighboring gene purpurin Neighboring gene alpha-L-iduronidase Neighboring gene solute carrier family 26 member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in retina development in camera-type eye IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in photoreceptor outer segment membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta
Names
Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858725.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColStr4.1.hap1 Primary Assembly

Genomic

  1. NC_084790.1 Reference bColStr4.1.hap1 Primary Assembly

    Range
    34174227..34194645 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010208627.2 → XP_010206929.1  rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta

    See identical proteins and their annotated locations for XP_010206929.1

    UniProtKB/TrEMBL
    A0A091KAH0
    Conserved Domains (2) summary
    smart00065
    Location:52 → 211
    GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
    pfam00233
    Location:537 → 781
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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