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EXOSC8 exosome component 8 [ Nestor notabilis (Kea) ]

Gene ID: 104400043, updated on 3-Aug-2024

Summary

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Gene symbol
EXOSC8
Gene description
exosome component 8
Locus tag
N333_11209
Gene type
protein coding
RefSeq status
MODEL
Organism
Nestor notabilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Nestor
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See EXOSC8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM69687v1 (GCF_000696875.1) Unplaced Scaffold NW_009929664.1 (33313..39683, complement)

NW_009929664.1Genomic Context describing neighboring genes Neighboring gene SPT20 homolog, SAGA complex component

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009929664.1 Unplaced Scaffold Reference ASM69687v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP43
Names
Exosome complex component RRP43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nestor notabilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69687v1

Genomic

  1. NW_009929664.1 Reference ASM69687v1

    Range
    33313..39683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010015082.1 → XP_010013384.1  exosome complex component RRP43

    Conserved Domains (1) summary
    cd11369
    Location:3 → 232
    RNase_PH_RRP43; RRP43 subunit of eukaryotic exosome
Nucleotide Protein
Heading Accession and Version

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