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CRTAP cartilage associated protein [ Tyto alba (common barn owl) ]

Gene ID: 104362172, updated on 3-Aug-2024

Summary

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Gene symbol
CRTAP
Gene description
cartilage associated protein
Locus tag
N341_11419
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881322.1 (12008480..12030204, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010003563.1 (7..20795)

NW_024881322.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine rich repeat protein 2 Neighboring gene sushi domain containing 5 Neighboring gene uncharacterized LOC104368156 Neighboring gene phosphodiesterase 1C Neighboring gene protein phosphatase 1 regulatory subunit 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables collagen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen fibril organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-proline hydroxylation to 3-hydroxy-L-proline IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cartilage-associated protein
Names
Cartilage-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881322.1 Reference T.alba_DEE_v4.0

    Range
    12008480..12030204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009968432.3 → XP_009966734.3  cartilage-associated protein

    Conserved Domains (1) summary
    TIGR03302
    Location:130 → 189
    OM_YfiO; outer membrane assembly lipoprotein YfiO
Nucleotide Protein
Heading Accession and Version

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