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ATF6 activating transcription factor 6 [ Tyto alba (common barn owl) ]

Gene ID: 104358644, updated on 3-Aug-2024

Summary

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Gene symbol
ATF6
Gene description
activating transcription factor 6
Locus tag
N341_12890
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881272.1 (8780329..8862548, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009989973.1 (18..77477, complement)

NW_024881272.1Genomic Context describing neighboring genes Neighboring gene hydroxysteroid 17-beta dehydrogenase 7 Neighboring gene olfactomedin like 2B Neighboring gene 1-phosphatidylinositol phosphodiesterase-like Neighboring gene selectin P

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-6 alpha
Names
Cyclic AMP-dependent transcription factor ATF-6 alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881272.1 Reference T.alba_DEE_v4.0

    Range
    8780329..8862548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042804771.1 → XP_042660705.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X3

    UniProtKB/TrEMBL
    A0A093ER39
    Conserved Domains (1) summary
    cd14700
    Location:302 → 353
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  2. XM_042804767.1 → XP_042660701.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X2

    UniProtKB/TrEMBL
    A0A093ER39
    Conserved Domains (1) summary
    cd14700
    Location:302 → 353
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  3. XM_042804775.1 → XP_042660709.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X4

    Conserved Domains (1) summary
    cd14700
    Location:177 → 228
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  4. XM_042804762.1 → XP_042660696.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X1

    UniProtKB/TrEMBL
    A0A093ER39
    Conserved Domains (1) summary
    cd14700
    Location:302 → 353
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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