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CPEB1 cytoplasmic polyadenylation element binding protein 1 [ Tyto alba (common barn owl) ]

Gene ID: 104358484, updated on 12-Mar-2024

Summary

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Gene symbol
CPEB1
Gene description
cytoplasmic polyadenylation element binding protein 1
Locus tag
N341_07670
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881317.1 (23157796..23200818)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009989300.1 (1912..33412, complement)

NW_024881317.1Genomic Context describing neighboring genes Neighboring gene AP-3 complex subunit beta-2-like Neighboring gene uncharacterized LOC122154560 Neighboring gene AP-3 complex subunit beta-2 Neighboring gene small nucleolar RNA SNORA71 Neighboring gene ribosomal protein S17 Neighboring gene telomere repeat binding bouquet formation protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA regulatory element binding translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation factor activity, RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of messenger ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic polyadenylation element-binding protein 1
Names
Cytoplasmic polyadenylation element-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881317.1 Reference T.alba_DEE_v4.0

    Range
    23157796..23200818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032990477.2 → XP_032846368.1  cytoplasmic polyadenylation element-binding protein 1 isoform X1

    Conserved Domains (4) summary
    pfam16366
    Location:525 → 580
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:26 → 328
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:330 → 437
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:448 → 531
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

  2. XM_032990478.2 → XP_032846369.1  cytoplasmic polyadenylation element-binding protein 1 isoform X2

    Conserved Domains (4) summary
    pfam16366
    Location:520 → 575
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:26 → 328
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:330 → 432
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:443 → 526
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

  3. XM_032990480.2 → XP_032846371.1  cytoplasmic polyadenylation element-binding protein 1 isoform X3

    Conserved Domains (4) summary
    pfam16366
    Location:508 → 563
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:26 → 328
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:330 → 420
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:431 → 514
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

  4. XM_042804259.1 → XP_042660193.1  cytoplasmic polyadenylation element-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A093GYD4
    Conserved Domains (2) summary
    smart00360
    Location:313 → 380
    RRM; RNA recognition motif
    cd19757
    Location:515 → 555
    Bbox1; B-box-type 1 zinc finger (Bbox1)

  5. XM_042804260.1 → XP_042660194.1  cytoplasmic polyadenylation element-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A093GYD4
    Conserved Domains (2) summary
    smart00360
    Location:313 → 375
    RRM; RNA recognition motif
    cd19757
    Location:510 → 550
    Bbox1; B-box-type 1 zinc finger (Bbox1)

  6. XM_042804261.1 → XP_042660195.1  cytoplasmic polyadenylation element-binding protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A093GYD4
    Conserved Domains (4) summary
    pfam16366
    Location:466 → 521
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 269
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:271 → 378
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:389 → 472
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

  7. XM_032990485.2 → XP_032846376.1  cytoplasmic polyadenylation element-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A093GYD4
    Conserved Domains (4) summary
    pfam16366
    Location:429 → 484
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 232
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:234 → 341
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:352 → 435
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

  8. XM_032990487.2 → XP_032846378.1  cytoplasmic polyadenylation element-binding protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A093GYD4
    Conserved Domains (4) summary
    pfam16366
    Location:466 → 521
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 269
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:271 → 378
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:389 → 472
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

  9. XM_032990486.2 → XP_032846377.1  cytoplasmic polyadenylation element-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A093GYD4
    Conserved Domains (4) summary
    pfam16366
    Location:429 → 484
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 232
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:234 → 341
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:352 → 435
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

  10. XM_032990481.2 → XP_032846372.1  cytoplasmic polyadenylation element-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A093GYD4
    Conserved Domains (4) summary
    pfam16366
    Location:429 → 484
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 232
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:234 → 341
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:352 → 435
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

  11. XM_032990483.2 → XP_032846374.1  cytoplasmic polyadenylation element-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A093GYD4
    Conserved Domains (4) summary
    pfam16366
    Location:429 → 484
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 232
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:234 → 341
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:352 → 435
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

  12. XM_032990482.2 → XP_032846373.1  cytoplasmic polyadenylation element-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A093GYD4
    Conserved Domains (4) summary
    pfam16366
    Location:429 → 484
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 232
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:234 → 341
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:352 → 435
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

  13. XM_032990484.2 → XP_032846375.1  cytoplasmic polyadenylation element-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A093GYD4
    Conserved Domains (4) summary
    pfam16366
    Location:429 → 484
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 232
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:234 → 341
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:352 → 435
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
Nucleotide Protein
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