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RBM17 RNA binding motif protein 17 [ Tyto alba (common barn owl) ]

Gene ID: 104355968, updated on 3-Aug-2024

Summary

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Gene symbol
RBM17
Gene description
RNA binding motif protein 17
Locus tag
N341_03307
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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See RBM17 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881282.1 (86715279..86730868, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010022944.1 (13829..26519, complement)

NW_024881282.1Genomic Context describing neighboring genes Neighboring gene protein kinase C theta Neighboring gene uncharacterized LOC122153446 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 Neighboring gene interleukin-2 receptor subunit alpha Neighboring gene endonuclease domain-containing 1 protein Neighboring gene uncharacterized LOC116962357

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 45
Names
Splicing factor 45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881282.1 Reference T.alba_DEE_v4.0

    Range
    86715279..86730868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032995776.2 → XP_032851667.1  splicing factor 45 isoform X2

    Conserved Domains (2) summary
    TIGR01645
    Location:172 → 397
    half-pint; poly-U binding splicing factor, half-pint family
    cd12647
    Location:302 → 396
    RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

  2. XM_032995774.2 → XP_032851665.1  splicing factor 45 isoform X1

    Conserved Domains (2) summary
    TIGR01645
    Location:173 → 398
    half-pint; poly-U binding splicing factor, half-pint family
    cd12647
    Location:303 → 397
    RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

  3. XM_042792740.1 → XP_042648674.1  splicing factor 45 isoform X1

    Conserved Domains (2) summary
    TIGR01645
    Location:173 → 398
    half-pint; poly-U binding splicing factor, half-pint family
    cd12647
    Location:303 → 397
    RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

  4. XM_032995775.2 → XP_032851666.1  splicing factor 45 isoform X1

    Conserved Domains (2) summary
    TIGR01645
    Location:173 → 398
    half-pint; poly-U binding splicing factor, half-pint family
    cd12647
    Location:303 → 397
    RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
Nucleotide Protein
Heading Accession and Version

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