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SUPT5H SPT5 homolog, DSIF elongation factor subunit [ Leptosomus discolor (cuckoo roller) ]

Gene ID: 104353488, updated on 3-Aug-2024

Summary

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Gene symbol
SUPT5H
Gene description
SPT5 homolog, DSIF elongation factor subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptosomus discolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Coraciiformes; Leptosomidae; Leptosomus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM69178v1 (GCF_000691785.1) Unplaced Scaffold NW_009885495.1 (43..3125)

NW_009885495.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009885495.1 Unplaced Scaffold Reference ASM69178v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DSIF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor SPT5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptosomus discolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69178v1

Genomic

  1. NW_009885495.1 Reference ASM69178v1

    Range
    43..3125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009960078.1 → XP_009958380.1  transcription elongation factor SPT5

    Conserved Domains (7) summary
    cd09888
    Location:1 → 57
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:126 → 492
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:68 → 105
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06082
    Location:212 → 262
    KOW_Spt5_2; KOW domain of Spt5, repeat 2
    cd06083
    Location:263 → 313
    KOW_Spt5_3; KOW domain of Spt5, repeat 3
    cd06084
    Location:361 → 403
    KOW_Spt5_4; KOW domain of Spt5, repeat 4
    cl00354
    Location:461 → 492
    KOW; KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese)
Nucleotide Protein
Heading Accession and Version

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