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CDC5L cell division cycle 5 like [ Haliaeetus albicilla (white-tailed eagle) ]

Gene ID: 104324133, updated on 3-Aug-2024

Summary

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Gene symbol
CDC5L
Gene description
cell division cycle 5 like
Locus tag
N329_02633
Gene type
protein coding
RefSeq status
MODEL
Organism
Haliaeetus albicilla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Accipitrimorphae; Accipitriformes; Accipitridae; Accipitrinae; Haliaeetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM69140v1 (GCF_000691405.1) Unplaced Scaffold NW_009791397.1 (383..37570)

NW_009791397.1Genomic Context describing neighboring genes Neighboring gene SPT3 homolog, SAGA and STAGA complex component

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009791397.1 Unplaced Scaffold Reference ASM69140v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell division cycle 5-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haliaeetus albicilla Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69140v1

Genomic

  1. NW_009791397.1 Reference ASM69140v1

    Range
    383..37570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009928130.1 → XP_009926432.1  cell division cycle 5-like protein isoform X1

    See identical proteins and their annotated locations for XP_009926432.1

    UniProtKB/TrEMBL
    A0A091QPL2
    Conserved Domains (4) summary
    smart00717
    Location:99 → 145
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd11659
    Location:95 → 146
    SANT_CDC5_II; SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II
    pfam11831
    Location:443 → 695
    Myb_Cef; pre-mRNA splicing factor component
    pfam13921
    Location:55 → 110
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  2. XM_009928131.1 → XP_009926433.1  cell division cycle 5-like protein isoform X2

    See identical proteins and their annotated locations for XP_009926433.1

    UniProtKB/TrEMBL
    A0A091QPL2
    Conserved Domains (2) summary
    COG5147
    Location:1 → 280
    REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
    pfam11831
    Location:381 → 633
    Myb_Cef; pre-mRNA splicing factor component

RNA

  1. XR_719239.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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