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PTCD1 pentatricopeptide repeat domain 1 [ Haliaeetus albicilla (white-tailed eagle) ]

Gene ID: 104311026, updated on 3-Aug-2024

Summary

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Gene symbol
PTCD1
Gene description
pentatricopeptide repeat domain 1
Locus tag
N329_10513
Gene type
protein coding
RefSeq status
MODEL
Organism
Haliaeetus albicilla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Accipitrimorphae; Accipitriformes; Accipitridae; Accipitrinae; Haliaeetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM69140v1 (GCF_000691405.1) Unplaced Scaffold NW_009763428.1 (2398..6849, complement)

NW_009763428.1Genomic Context describing neighboring genes Neighboring gene BUD31 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009763428.1 Unplaced Scaffold Reference ASM69140v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haliaeetus albicilla Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69140v1

Genomic

  1. NW_009763428.1 Reference ASM69140v1

    Range
    2398..6849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009915316.1 → XP_009913618.1  pentatricopeptide repeat-containing protein 1, mitochondrial

    Conserved Domains (3) summary
    TIGR00756
    Location:14 → 46
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:14 → 40
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:14 → 57
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

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