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EXOSC7 exosome component 7 [ Dryobates pubescens (Downy woodpecker) ]

Gene ID: 104298296, updated on 3-Aug-2024

Summary

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Gene symbol
EXOSC7
Gene description
exosome component 7
Locus tag
N307_01797
See related
EnsemblRapid:ENSPPUG00010003147
Gene type
protein coding
RefSeq status
MODEL
Organism
Dryobates pubescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Piciformes; Picidae; Dryobates
Orthologs
human mouse all
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Genomic context

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See EXOSC7 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current bDryPub1.pri (GCF_014839835.1) 4 NC_071615.1 (20549701..20570232)
100 previous assembly ASM69900v1 (GCF_000699005.1) Unplaced Scaffold NW_009663046.1 (6794437..6814576, complement)

Chromosome 4 - NC_071615.1Genomic Context describing neighboring genes Neighboring gene transglutaminase 4 Neighboring gene zinc finger DHHC-type palmitoyltransferase 3 Neighboring gene C-type lectin domain family 3 member B Neighboring gene CUB domain containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP42
Names
Exosome complex component RRP42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014839835.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDryPub1.pri

Genomic

  1. NC_071615.1 Reference bDryPub1.pri

    Range
    20549701..20570232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009898354.2 → XP_009896656.1  exosome complex component RRP42

    See identical proteins and their annotated locations for XP_009896656.1

    UniProtKB/TrEMBL
    A0A093GFL6
    Related
    ENSPPUP00010003234.1, ENSPPUT00010004751.1
    Conserved Domains (2) summary
    cd11367
    Location:6 → 276
    RNase_PH_RRP42; RRP42 subunit of eukaryotic exosome
    COG2123
    Location:1 → 276
    Rrp42; Exosome complex RNA-binding protein Rrp42, RNase PH superfamily [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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