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SLIT2 slit guidance ligand 2 [ Cariama cristata (Red-legged seriema) ]

Gene ID: 104168733, updated on 3-Aug-2024

Summary

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Gene symbol
SLIT2
Gene description
slit guidance ligand 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Cariama cristata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Cariamiformes; Cariamidae; Cariama
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SLIT2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current ASM69053v1 (GCF_000690535.1) Unplaced Scaffold NW_009598728.1 (4260..81672)

NW_009598728.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009598728.1 Unplaced Scaffold Reference ASM69053v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Roundabout binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cell growth IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal ganglion cell axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
slit homolog 2 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cariama cristata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69053v1

Genomic

  1. NW_009598728.1 Reference ASM69053v1

    Range
    4260..81672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009709418.1 → XP_009707720.1  slit homolog 2 protein

    Conserved Domains (9) summary
    smart00013
    Location:422 → 453
    LRRNT; Leucine rich repeat N-terminal domain
    smart00082
    Location:554 → 603
    LRRCT; Leucine rich repeat C-terminal domain
    smart00282
    Location:878 → 1011
    LamG; Laminin G domain
    cd00054
    Location:771 → 807
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00116
    Location:85 → 341
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:232 → 254
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:232 → 270
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:472 → 532
    LRR_8; Leucine rich repeat
    cl21545
    Location:1163 → 1223
    GHB_like; Glycoprotein hormone beta chain homologues
Nucleotide Protein
Heading Accession and Version

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