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SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like [ Struthio camelus (African ostrich) ]

Gene ID: 104152184, updated on 23-Aug-2024

Summary

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Gene symbol
SPECC1L
Gene description
sperm antigen with calponin homology and coiled-coil domains 1 like
Locus tag
N308_10021
See related
Ensembl:ENSSCUG00000018904
Gene type
protein coding
RefSeq status
MODEL
Organism
Struthio camelus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Struthioniformes; Struthionidae; Struthio
Also known as
Cytospin-A
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM69896v1 (GCF_000698965.1) Unplaced Scaffold NW_009272140.1 (734588..787191, complement)

NW_009272140.1Genomic Context describing neighboring genes Neighboring gene beta-ureidopropionase 1 Neighboring gene adenosine A2a receptor Neighboring gene BCR activator of RhoGEF and GTPase Neighboring gene RAB36, member RAS oncogene family

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009272140.1 Unplaced Scaffold Reference ASM69896v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytospin-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Struthio camelus australis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69896v1 Primary Assembly

Genomic

  1. NW_009272140.1 Reference ASM69896v1 Primary Assembly

    Range
    734588..787191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009687412.1 → XP_009685707.1  cytospin-A

    See identical proteins and their annotated locations for XP_009685707.1

    UniProtKB/TrEMBL
    A0A093KBR5
    Related
    ENSSCUP00000025850.1, ENSSCUT00000034243.1
    Conserved Domains (3) summary
    COG1340
    Location:519 → 793
    COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
    cd00014
    Location:1015 → 1115
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl19219
    Location:628 → 705
    DUF342; Protein of unknown function (DUF342)
Nucleotide Protein
Heading Accession and Version

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