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HMGB1 high mobility group box 1 [ Struthio camelus (African ostrich) ]

Gene ID: 104151580, updated on 23-Aug-2024

Summary

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Gene symbol
HMGB1
Gene description
high mobility group box 1
See related
Ensembl:ENSSCUG00000014823
Gene type
protein coding
RefSeq status
MODEL
Organism
Struthio camelus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Struthioniformes; Struthionidae; Struthio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM69896v1 (GCF_000698965.1) Unplaced Scaffold NW_009272086.1 (3794121..3832477)

NW_009272086.1Genomic Context describing neighboring genes Neighboring gene arachidonate 5-lipoxygenase activating protein Neighboring gene ubiquitin specific peptidase like 1 Neighboring gene uncharacterized LOC104151581 Neighboring gene katanin catalytic subunit A1 like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009272086.1 Unplaced Scaffold Reference ASM69896v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Struthio camelus australis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69896v1 Primary Assembly

Genomic

  1. NW_009272086.1 Reference ASM69896v1 Primary Assembly

    Range
    3794121..3832477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009686507.1 → XP_009684802.1  high mobility group protein B1

    See identical proteins and their annotated locations for XP_009684802.1

    UniProtKB/TrEMBL
    A0A093I028
    Related
    ENSSCUP00000020208.1, ENSSCUT00000026683.1
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    cl00082
    Location:7 → 78
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
Nucleotide Protein
Heading Accession and Version

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